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From "Randy Watler (JIRA)" <jetspeed-...@portals.apache.org>
Subject [jira] Commented: (JS2-973) Running Jetspeed 2.2 on Websphere 6.1 / Oracle10
Date Tue, 05 May 2009 02:01:30 GMT

    [ https://issues.apache.org/jira/browse/JS2-973?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12705862#action_12705862
] 

Randy Watler commented on JS2-973:
----------------------------------

The demo web application descriptor, (web.xml), issue has been resolved with commit svn version
771506.

However, we are now facing an internal WAS thread deadlock during deployment of J2 "full"
demo-dbpsml configuration. 

1LKDEADLOCK    Deadlock detected !!!
NULL           ---------------------
NULL           
2LKDEADLOCKTHR  Thread "server.startup : 1" (0x8FAEC100)
3LKDEADLOCKWTR    is waiting for:
4LKDEADLOCKMON      sys_mon_t:0x8F6A44F0 infl_mon_t: 0x8F6A4530:
4LKDEADLOCKOBJ      com/ibm/ws/classloader/CompoundClassLoader@99BD7C28/99BD7C34: 
3LKDEADLOCKOWN    which is owned by:
2LKDEADLOCKTHR  Thread "Timer-6" (0x08BEF400)
3LKDEADLOCKWTR    which is waiting for:
4LKDEADLOCKMON      sys_mon_t:0x8F6A45A0 infl_mon_t: 0x8F6A45E0:
4LKDEADLOCKOBJ      com/ibm/ws/classloader/CompoundClassLoader@99BB9B78/99BB9B84: 
3LKDEADLOCKOWN    which is owned by:
2LKDEADLOCKTHR  Thread "server.startup : 1" (0x8FAEC100)


3XMTHREADINFO      "Timer-6" (TID:0x08BEF400, sys_thread_t:0x090960B4, state:B, native ID:0x00001AA2)
prio=5
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:375(Compiled
Code))
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at java/lang/J9VMInternals.verifyImpl(Native Method)
4XESTACKTRACE          at java/lang/J9VMInternals.verify(J9VMInternals.java:68(Compiled Code))
4XESTACKTRACE          at java/lang/J9VMInternals.initialize(J9VMInternals.java:129(Compiled
Code))
4XESTACKTRACE          at com/sun/xml/bind/v2/model/nav/ReflectionNavigator.<clinit>(ReflectionNavigator.java:73)
4XESTACKTRACE          at java/lang/J9VMInternals.initializeImpl(Native Method)
4XESTACKTRACE          at java/lang/J9VMInternals.initialize(J9VMInternals.java:194(Compiled
Code))
4XESTACKTRACE          at com/sun/xml/bind/v2/model/nav/Navigator.<clinit>(Navigator.java:256)
4XESTACKTRACE          at java/lang/J9VMInternals.initializeImpl(Native Method)
4XESTACKTRACE          at java/lang/J9VMInternals.initialize(J9VMInternals.java:194(Compiled
Code))
4XESTACKTRACE          at com/sun/xml/bind/v2/model/impl/RuntimeModelBuilder.<init>(RuntimeModelBuilder.java:89)
4XESTACKTRACE          at com/sun/xml/bind/v2/runtime/JAXBContextImpl.getTypeInfoSet(JAXBContextImpl.java:432)
4XESTACKTRACE          at com/sun/xml/bind/v2/runtime/JAXBContextImpl.<init>(JAXBContextImpl.java:297)
4XESTACKTRACE          at com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:139)
4XESTACKTRACE          at com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:117)
4XESTACKTRACE          at com/sun/xml/bind/v2/ContextFactory.createContext(ContextFactory.java:188)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke0(Native Method)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE          at sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE          at java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE          at javax/xml/bind/ContextFinder.newInstance(ContextFinder.java:128)
4XESTACKTRACE          at javax/xml/bind/ContextFinder.find(ContextFinder.java:277)
4XESTACKTRACE          at javax/xml/bind/JAXBContext.newInstance(JAXBContext.java:372)
4XESTACKTRACE          at javax/xml/bind/JAXBContext.newInstance(JAXBContext.java:337)
4XESTACKTRACE          at org/apache/pluto/container/impl/PortletAppDescriptorServiceImpl.read(PortletAppDescriptorServiceImpl.java:148)
4XESTACKTRACE          at org/apache/jetspeed/descriptor/JetspeedDescriptorServiceImpl.read(JetspeedDescriptorServiceImpl.java:144)
4XESTACKTRACE          at org/apache/jetspeed/util/descriptor/PortletApplicationWar.createPortletApp(PortletApplicationWar.java:165)
4XESTACKTRACE          at org/apache/jetspeed/tools/pamanager/PortletApplicationManager.registerPortletApplication(PortletApplicationManager.java:352)
4XESTACKTRACE          at org/apache/jetspeed/tools/pamanager/PortletApplicationManager.attemptStartPA(PortletApplicationManager.java:528)
4XESTACKTRACE          at org/apache/jetspeed/tools/pamanager/PortletApplicationManager.tryStartPortletApplication(PortletApplicationManager.java:244)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke0(Native Method)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE          at sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE          at java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE          at org/springframework/aop/support/AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
4XESTACKTRACE          at org/springframework/aop/framework/ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
4XESTACKTRACE          at org/springframework/aop/framework/ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
4XESTACKTRACE          at org/springframework/transaction/interceptor/TransactionInterceptor.invoke(TransactionInterceptor.java:106)
4XESTACKTRACE          at org/springframework/aop/framework/ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
4XESTACKTRACE          at org/springframework/aop/framework/JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
4XESTACKTRACE          at $Proxy16.tryStartPortletApplication(Bytecode PC:57)
4XESTACKTRACE          at org/apache/jetspeed/tools/pamanager/PortletApplicationManager.retryStartPortletApplication(PortletApplicationManager.java:214)
4XESTACKTRACE          at org/apache/jetspeed/tools/pamanager/PortletApplicationManager.startPortletApplication(PortletApplicationManager.java:195)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke0(Native Method)
4XESTACKTRACE          at sun/reflect/NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:79(Compiled
Code))
4XESTACKTRACE          at sun/reflect/DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43(Compiled
Code))
4XESTACKTRACE          at java/lang/reflect/Method.invoke(Method.java:618(Compiled Code))
4XESTACKTRACE          at org/springframework/aop/support/AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
4XESTACKTRACE          at org/springframework/aop/framework/JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:198)
4XESTACKTRACE          at $Proxy16.startPortletApplication(Bytecode PC:31)
4XESTACKTRACE          at org/apache/jetspeed/container/JetspeedContainerServlet.attemptStart(JetspeedContainerServlet.java:191)
4XESTACKTRACE          at org/apache/jetspeed/container/JetspeedContainerServlet$1.run(JetspeedContainerServlet.java:162)
4XESTACKTRACE          at java/util/TimerThread.mainLoop(Timer.java:527)
4XESTACKTRACE          at java/util/TimerThread.run(Timer.java:477)


3XMTHREADINFO      "server.startup : 1" (TID:0x8FAEC100, sys_thread_t:0x903CA8F8, state:B,
native ID:0x00001A76) prio=5
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at org/apache/jetspeed/security/impl/RdbmsPolicy.implies(RdbmsPolicy.java:102)
4XESTACKTRACE          at org/apache/jetspeed/security/impl/JaasPolicyCoordinator.implies(JaasPolicyCoordinator.java:79)
4XESTACKTRACE          at java/security/ProtectionDomain.implies(ProtectionDomain.java:221(Compiled
Code))
4XESTACKTRACE          at org/eclipse/osgi/framework/internal/core/SystemBundle.hasPermission(SystemBundle.java:265)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/PermissionChecker.checkPermission(PermissionChecker.java:53)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverConstraint.isSatisfiedBy(ResolverConstraint.java:45)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireImport(ResolverImpl.java:204)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:153)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireRequire(ResolverImpl.java:190)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:148)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireImport(ResolverImpl.java:225)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:153)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireRequire(ResolverImpl.java:190)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireBundle(ResolverImpl.java:148)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.rewireBundles(ResolverImpl.java:137)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.initialize(ResolverImpl.java:101)
4XESTACKTRACE          at org/eclipse/osgi/internal/module/ResolverImpl.resolveDynamicImport(ResolverImpl.java:1083)
4XESTACKTRACE          at org/eclipse/osgi/internal/resolver/StateImpl.linkDynamicImport(StateImpl.java:605(Compiled
Code))
4XESTACKTRACE          at org/eclipse/osgi/framework/internal/core/BundleLoader.findDynamicSource(BundleLoader.java:874(Compiled
Code))
4XESTACKTRACE          at org/eclipse/osgi/framework/internal/core/BundleLoader.findClass(BundleLoader.java:391(Compiled
Code))
4XESTACKTRACE          at org/eclipse/osgi/framework/internal/core/BundleLoader.findClass(BundleLoader.java:347(Compiled
Code))
4XESTACKTRACE          at org/eclipse/osgi/internal/baseadaptor/DefaultClassLoader.loadClass(DefaultClassLoader.java:83(Compiled
Code))
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:621(Compiled Code))
4XESTACKTRACE          at com/ibm/ws/bootstrap/ExtClassLoader.loadClass(ExtClassLoader.java:87(Compiled
Code))
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at com/ibm/ws/classloader/ProtectionClassLoader.loadClass(ProtectionClassLoader.java:58(Compiled
Code))
4XESTACKTRACE          at com/ibm/ws/classloader/ProtectionClassLoader.loadClass(ProtectionClassLoader.java:54(Compiled
Code))
4XESTACKTRACE          at com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:394(Compiled
Code))
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at com/ibm/ws/classloader/CompoundClassLoader.loadClass(CompoundClassLoader.java:394(Compiled
Code))
4XESTACKTRACE          at java/lang/ClassLoader.loadClass(ClassLoader.java:595(Compiled Code))
4XESTACKTRACE          at java/util/ResourceBundle.loadBundle(ResourceBundle.java:1075)
4XESTACKTRACE          at java/util/ResourceBundle.findBundle(ResourceBundle.java:942(Compiled
Code))
4XESTACKTRACE          at java/util/ResourceBundle.getBundleImpl(ResourceBundle.java:760(Compiled
Code))
4XESTACKTRACE          at java/util/ResourceBundle.getBundle(ResourceBundle.java:716)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/common/impl/LanguageSetImpl.loadResourceBundle(LanguageSetImpl.java:135)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/common/impl/LanguageSetImpl.init(LanguageSetImpl.java:99)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletDefinitionTranslator.createLanguageSet(WCCMPortletDefinitionTranslator.java:110)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletDefinitionTranslator.translate(WCCMPortletDefinitionTranslator.java:72)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/translator/wccm/WCCMPortletApplicationDefinitionTranslator.translate(WCCMPortletApplicationDefinitionTranslator.java:63)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/om/translator/wccm/WCCMWebApplicationDefinitionTranslator.translate(WCCMWebApplicationDefinitionTranslator.java:37)
4XESTACKTRACE          at com/ibm/ws/portletcontainer/runtime/PortletMetaDataListener.metaDataCreated(PortletMetaDataListener.java:74)
4XESTACKTRACE          at com/ibm/ws/runtime/component/MetaDataMgrImpl.fireMetaDataCreated(MetaDataMgrImpl.java:188)
4XESTACKTRACE          at com/ibm/ws/webcontainer/metadata/WebMetaDataFactory.createMetaData(WebMetaDataFactory.java:205)
4XESTACKTRACE          at com/ibm/ws/runtime/component/MetaDataMgrImpl.createMetaDataFromFactories(MetaDataMgrImpl.java:172)
4XESTACKTRACE          at com/ibm/ws/runtime/component/MetaDataMgrImpl.createMetaData(MetaDataMgrImpl.java:306)
4XESTACKTRACE          at com/ibm/ws/runtime/component/DeployedModuleImpl.start(DeployedModuleImpl.java:563)
4XESTACKTRACE          at com/ibm/ws/runtime/component/DeployedApplicationImpl.start(DeployedApplicationImpl.java:817)
4XESTACKTRACE          at com/ibm/ws/runtime/component/ApplicationMgrImpl.startApplication(ApplicationMgrImpl.java:950)
4XESTACKTRACE          at com/ibm/ws/runtime/component/ApplicationMgrImpl$AppInitializer.run(ApplicationMgrImpl.java:2120)
4XESTACKTRACE          at com/ibm/wsspi/runtime/component/WsComponentImpl$_AsynchInitializer.run(WsComponentImpl.java:342)
4XESTACKTRACE          at com/ibm/ws/util/ThreadPool$Worker.run(ThreadPool.java:1469)


> Running Jetspeed 2.2 on Websphere 6.1 / Oracle10
> ------------------------------------------------
>
>                 Key: JS2-973
>                 URL: https://issues.apache.org/jira/browse/JS2-973
>             Project: Jetspeed 2
>          Issue Type: Task
>    Affects Versions: 2.2.0
>            Reporter: Ate Douma
>            Assignee: Randy Watler
>             Fix For: 2.2.0
>
>
> Testing current Jetspeed 2.2-SNAPSHOT on Websphere 6.1 I;'ve encountered some issues
which I'm recording here for the record and/or as outstanding TODO tasks.
> - xml-apis jar: all the JAXP apis are now part of Java5+ and having this jar in WEB-INF/lib
causes problems on Websphere
>   TODO: remove/exclude this dependency in maven poms
> - stax-api-1.0.1.jar: this artifact (incorrectly) contains javax.xml.namespace.* classes
(QName specifically) which breaks JAXB on Websphere
>   TODO: upgrade to stax-api-1.0.2.jar which no longer contains the javax.xml.namespace
package
> - DDLUtils generates SEQUENCE seq_SECURITY_DOMAIN_DOMAIN_ID and TRIGGER trg_SECURITY_DOMAIN_DOMAIN_ID
for SECURITY_DOMAIN.UIX_DOMAIN_NAME for an Oracle database
>   During creation of the schema in the database the trigger code fails to be created.
However, both the sequence and the trigger are not needed anyway.
>   TODO: figure out how to disable the sequence and trigger generation from DDLUtils

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