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From Jaanai Zhang <cloud.pos...@gmail.com>
Subject Re: Issue in upgrading phoenix : java.lang.ArrayIndexOutOfBoundsException: SYSTEM:CATALOG 63
Date Wed, 17 Oct 2018 12:11:03 GMT
It seems that is impossible to upgrade from Phoenix-4.6 to Phoenix-4.14,
the schema of SYSTEM  had been changed or some futures will be
incompatible.  Maybe you can migrate data from Phoenix-4.6 to Phoenix-4.14,
this solution can ensure that everything will be right.

----------------------------------------
   Jaanai Zhang
   Best regards!



Tanvi Bhandari <tanvi.bhandari@gmail.com> 于2018年10月17日周三 下午3:48写道:

> @Shamvenk
>
> Yes I did check the STATS table from hbase shell, it's not empty.
>
> After dropping all SYSTEM tables and mapping hbase-tables to phoenix
> tables by executing all DDLs, I am seeing new issue.
>
> I have a table and an index on that table. Number of records in index
> table and main table are not matching now.
> select count(*) from "my_index";
> select count(COL) from "my_table";-- where COL is not part of index.
>
> Can someone tell me what can be done here? Is there any easier way to
> upgrade from Phoenix-4.6 to Phoenix-4.14?
>
>
>
> On Thu, Sep 13, 2018 at 8:55 PM venk sham <shamvenk@gmail.com> wrote:
>
>> Did you check system.stats,. If it us empty, needs to be rebuilt by
>> running major compact on hbasr
>>
>> On Tue, Sep 11, 2018, 11:33 AM Tanvi Bhandari <tanvi.bhandari@gmail.com>
>> wrote:
>>
>>> Hi,
>>>
>>>
>>>
>>> I am trying to upgrade the phoenix binaries in my setup from phoenix-4.6
>>> (had optional concept of schema) to phoenix-4.14 (schema is a must in
>>> here).
>>>
>>> Earlier, I had the phoenix-4.6-hbase-1.1 binaries. When I try to run the
>>> phoenix-4.14-hbase-1.3 on the same data. Hbase comes up fine But when I try
>>> to connect to phoenix using sqline client,  I get the following error on
>>> *console*:
>>>
>>>
>>>
>>> 18/09/07 04:22:48 WARN ipc.CoprocessorRpcChannel: Call failed on
>>> IOException
>>>
>>> org.apache.hadoop.hbase.DoNotRetryIOException:
>>> org.apache.hadoop.hbase.DoNotRetryIOException: SYSTEM:CATALOG: 63
>>>
>>>         at
>>> org.apache.phoenix.util.ServerUtil.createIOException(ServerUtil.java:120)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.getVersion(MetaDataEndpointImpl.java:3572)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.generated.MetaDataProtos$MetaDataService.callMethod(MetaDataProtos.java:16422)
>>>
>>>         at
>>> org.apache.hadoop.hbase.regionserver.HRegion.execService(HRegion.java:7435)
>>>
>>>         at
>>> org.apache.hadoop.hbase.regionserver.RSRpcServices.execServiceOnRegion(RSRpcServices.java:1875)
>>>
>>>         at
>>> org.apache.hadoop.hbase.regionserver.RSRpcServices.execService(RSRpcServices.java:1857)
>>>
>>>         at
>>> org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:32209)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:2114)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:101)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RpcExecutor.consumerLoop(RpcExecutor.java:130)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RpcExecutor$1.run(RpcExecutor.java:107)
>>>
>>>         at java.lang.Thread.run(Thread.java:745)
>>>
>>> Caused by: java.lang.ArrayIndexOutOfBoundsException: 63
>>>
>>>         at org.apache.phoenix.schema.PTableImpl.init(PTableImpl.java:517)
>>>
>>>         at
>>> org.apache.phoenix.schema.PTableImpl.<init>(PTableImpl.java:421)
>>>
>>>         at
>>> org.apache.phoenix.schema.PTableImpl.makePTable(PTableImpl.java:406)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.getTable(MetaDataEndpointImpl.java:1046)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.buildTable(MetaDataEndpointImpl.java:587)
>>>
>>>        at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.loadTable(MetaDataEndpointImpl.java:1305)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.getVersion(MetaDataEndpointImpl.java:3568)
>>>
>>>         ... 10 more
>>>
>>>
>>>
>>>         at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
>>> Method)
>>>
>>>         at
>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
>>>
>>>         at
>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
>>>
>>>         at
>>> java.lang.reflect.Constructor.newInstance(Constructor.java:423)
>>>
>>>         at
>>> org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
>>>
>>>         at
>>> org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:95)
>>>
>>>         at
>>> org.apache.hadoop.hbase.protobuf.ProtobufUtil.getRemoteException(ProtobufUtil.java:326)
>>>
>>>         at
>>> org.apache.hadoop.hbase.protobuf.ProtobufUtil.execService(ProtobufUtil.java:1629)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel$1.call(RegionCoprocessorRpcChannel.java:104)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel$1.call(RegionCoprocessorRpcChannel.java:94)
>>>
>>>         at
>>> org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRetries(RpcRetryingCaller.java:136)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel.callExecService(RegionCoprocessorRpcChannel.java:107)
>>>
>>>         at
>>> org.apache.hadoop.hbase.ipc.CoprocessorRpcChannel.callMethod(CoprocessorRpcChannel.java:56)
>>>
>>>         at
>>> org.apache.phoenix.coprocessor.generated.MetaDataProtos$MetaDataService$Stub.getVersion(MetaDataProtos.java:16739)
>>>
>>>         at
>>> org.apache.phoenix.query.ConnectionQueryServicesImpl$5.call(ConnectionQueryServicesImpl.java:1271)
>>>
>>>         at
>>> org.apache.phoenix.query.ConnectionQueryServicesImpl$5.call(ConnectionQueryServicesImpl.java:1263)
>>>
>>>         at
>>> org.apache.hadoop.hbase.client.HTable$15.call(HTable.java:1736)
>>>
>>>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>>>
>>>         at
>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>>>
>>>         at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>>>
>>>         at java.lang.Thread.run(Thread.java:745)
>>>
>>>
>>>
>>>
>>>
>>> *Region-server logs are as follows: *
>>>
>>> 2018-09-07 03:23:36,170 ERROR
>>> [B.defaultRpcServer.handler=1,queue=1,port=29062]
>>> coprocessor.MetaDataEndpointImpl: loading system catalog table inside
>>> getVersion failed
>>>
>>> java.lang.ArrayIndexOutOfBoundsException: 63
>>>
>>>                at
>>> org.apache.phoenix.schema.PTableImpl.init(PTableImpl.java:517)
>>>
>>>                at
>>> org.apache.phoenix.schema.PTableImpl.<init>(PTableImpl.java:421)
>>>
>>>                at
>>> org.apache.phoenix.schema.PTableImpl.makePTable(PTableImpl.java:406)
>>>
>>>                at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.getTable(MetaDataEndpointImpl.java:1046)
>>>
>>>                at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.buildTable(MetaDataEndpointImpl.java:587)
>>>
>>>                at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.loadTable(MetaDataEndpointImpl.java:1305)
>>>
>>>                at
>>> org.apache.phoenix.coprocessor.MetaDataEndpointImpl.getVersion(MetaDataEndpointImpl.java:3568)
>>>
>>>                at
>>> org.apache.phoenix.coprocessor.generated.MetaDataProtos$MetaDataService.callMethod(MetaDataProtos.java:16422)
>>>
>>>                at
>>> org.apache.hadoop.hbase.regionserver.HRegion.execService(HRegion.java:7435)
>>>
>>>                at
>>> org.apache.hadoop.hbase.regionserver.RSRpcServices.execServiceOnRegion(RSRpcServices.java:1875)
>>>
>>>                at
>>> org.apache.hadoop.hbase.regionserver.RSRpcServices.execService(RSRpcServices.java:1857)
>>>
>>>                at
>>> org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:32209)
>>>
>>>                at
>>> org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:2114)
>>>
>>>                at
>>> org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:101)
>>>
>>>                at
>>> org.apache.hadoop.hbase.ipc.RpcExecutor.consumerLoop(RpcExecutor.java:130)
>>>
>>>                at
>>> org.apache.hadoop.hbase.ipc.RpcExecutor$1.run(RpcExecutor.java:107)
>>>
>>>                at java.lang.Thread.run(Thread.java:745)
>>>
>>>
>>>
>>> suspecting that this could be something wrong with SYSTEM table, I went
>>> ahead and dropped all SYSTEM tables from hbase shell and again tried
>>> connecting to phoenix sqlline client. This time connecting through
>>> phoenix-sqlline worked for me. But none of my tables were visible in
>>> Phoenix shell only SYSTEM tables were visible.  So I went ahead and mapped
>>> hbase tables to phoenix and created them explicitly from phoenix sqlline
>>> client. I first created schema corresponding to namespace and then tables.
>>> This way my tables were visible in phoenix sqlline. *Select Count(*)*
>>> query on my table was returning 8 (expected) records as well but when *select
>>> ** query is not returning any record. Can someone tell me what can I do
>>> next in this case?
>>>
>>>
>>>
>>> Thanks,
>>>
>>> Tanvi
>>>
>>>
>>>
>>

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