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From Francis Chuang <francischu...@apache.org>
Subject Re: Phoenix 5.0 could not commit transaction: org.apache.phoenix.execute.CommitException: org.apache.hadoop.hbase.client.RetriesExhaustedWithDetailsException: Failed 1 action: org.apache.phoenix.hbase.index.builder.IndexBuildingFailureException: Failed to build index for unexpected reason!
Date Wed, 26 Sep 2018 01:25:32 GMT
After some investigation, I found that Phoenix 5.0.0 is only compatible 
with HBase 2.0.0.

In 2.0.1 and onward, compare(final Cell a, final Cell b) in 
CellComparatorImpl was changed to final: 
https://github.com/apache/hbase/blame/master/hbase-common/src/main/java/org/apache/hadoop/hbase/CellComparatorImpl.java#L67

This change affected HBase 2.0.1 and 2.0.2.

As Phoenix 5.0.0 relies on this behavior: 
https://github.com/apache/phoenix/blob/8a819c6c3b4befce190c6ac759f744df511de61d/phoenix-core/src/main/java/org/apache/phoenix/hbase/index/covered/data/IndexMemStore.java#L84

Fortunately, this is fixed in Phoenix master: 
https://github.com/apache/phoenix/blob/master/phoenix-core/src/main/java/org/apache/phoenix/hbase/index/covered/data/IndexMemStore.java#L82

The issue should be resolved in the next release of Phoenix.

The problem is that I wrongly assumed HBase's version numbers to be 
following semver and that a patch release would not introduce breaking 
changes.

On 26/09/2018 1:04 AM, Jaanai Zhang wrote:
>
>
>     Is my method of installing HBase and Phoenix correct?
>
> Did you check versions of HBase that exists in your classpath?
>
>     Is this a compatibility issue with Guava?
>
> It isn't an exception which incompatible with Guava
>
> ----------------------------------------
>    Jaanai Zhang
>    Best regards!
>
>
>
> Francis Chuang <francischuang@apache.org 
> <mailto:francischuang@apache.org>> 于2018年9月25日周二 下午8:25写道:
>
>     Thanks for taking a look, Jaanai!
>
>     Is my method of installing HBase and Phoenix correct? See
>     https://github.com/Boostport/hbase-phoenix-all-in-one/blob/master/Dockerfile#L12
>
>     Is this a compatibility issue with Guava?
>
>     Francis
>
>     On 25/09/2018 10:21 PM, Jaanai Zhang wrote:
>>
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore$1
>>         overrides
>>         final method
>>         compare.(Lorg/apache/hadoop/hbase/Cell;Lorg/apache/hadoop/hbase/Cell;)I
>>                      at java.lang.ClassLoader.defineClass1(Native Method)
>>                      at
>>         java.lang.ClassLoader.defineClass(ClassLoader.java:763)
>>                      at
>>
>>     It looks like that HBase's Jars are incompatible.
>>
>>     ----------------------------------------
>>        Jaanai Zhang
>>        Best regards!
>>
>>
>>
>>     Francis Chuang <francischuang@apache.org
>>     <mailto:francischuang@apache.org>> 于2018年9月25日周二 下午8:06写道:
>>
>>         Hi All,
>>
>>         I recently updated one of my Go apps to use Phoenix 5.0 with
>>         HBase
>>         2.0.2. I am using my Phoenix + HBase all in one docker image
>>         available
>>         here: https://github.com/Boostport/hbase-phoenix-all-in-one
>>
>>         This is the log/output from the exception:
>>
>>         RuntimeException: org.apache.phoenix.execute.CommitException:
>>         org.apache.hadoop.hbase.client.RetriesExhaustedWithDetailsException:
>>
>>         Failed 1 action:
>>         org.apache.phoenix.hbase.index.builder.IndexBuildingFailureException:
>>
>>         Failed to build index for unexpected reason!
>>                      at
>>         org.apache.phoenix.hbase.index.util.IndexManagementUtil.rethrowIndexingException(IndexManagementUtil.java:206)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:351)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1010)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost$ObserverOperationWithoutResult.callObserver(CoprocessorHost.java:540)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost.execOperation(CoprocessorHost.java:614)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.preBatchMutate(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion$MutationBatchOperation.prepareMiniBatchOperations(HRegion.java:3487)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.doMiniBatchMutate(HRegion.java:3896)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3854)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3785)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doBatchOp(RSRpcServices.java:1027)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicBatchOp(RSRpcServices.java:959)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicRegionMutation(RSRpcServices.java:922)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.multi(RSRpcServices.java:2666)
>>                      at
>>         org.apache.hadoop.hbase.shaded.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:42014)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:413)
>>                      at
>>         org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:130)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:324)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:304)
>>                  Caused by: java.lang.VerifyError: class
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore$1
>>         overrides
>>         final method
>>         compare.(Lorg/apache/hadoop/hbase/Cell;Lorg/apache/hadoop/hbase/Cell;)I
>>                      at java.lang.ClassLoader.defineClass1(Native Method)
>>                      at
>>         java.lang.ClassLoader.defineClass(ClassLoader.java:763)
>>                      at
>>         java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
>>                      at
>>         java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
>>                      at
>>         java.net.URLClassLoader.access$100(URLClassLoader.java:73)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:368)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:362)
>>                      at
>>         java.security.AccessController.doPrivileged(Native Method)
>>                      at
>>         java.net.URLClassLoader.findClass(URLClassLoader.java:361)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>>                      at
>>         sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore.<init>(IndexMemStore.java:82)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.LocalTableState.<init>(LocalTableState.java:57)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.NonTxIndexBuilder.getIndexUpdate(NonTxIndexBuilder.java:52)
>>                      at
>>         org.apache.phoenix.hbase.index.builder.IndexBuildManager.getIndexUpdate(IndexBuildManager.java:90)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutateWithExceptions(Indexer.java:503)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:348)
>>                      ... 18 more
>>                  : 1 time, servers with issues:
>>         9ac923bd5c9f,16020,1537875547341
>>         -> CommitException:
>>         org.apache.hadoop.hbase.client.RetriesExhaustedWithDetailsException:
>>
>>         Failed 1 action:
>>         org.apache.phoenix.hbase.index.builder.IndexBuildingFailureException:
>>
>>         Failed to build index for unexpected reason!
>>                      at
>>         org.apache.phoenix.hbase.index.util.IndexManagementUtil.rethrowIndexingException(IndexManagementUtil.java:206)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:351)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1010)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost$ObserverOperationWithoutResult.callObserver(CoprocessorHost.java:540)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost.execOperation(CoprocessorHost.java:614)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.preBatchMutate(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion$MutationBatchOperation.prepareMiniBatchOperations(HRegion.java:3487)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.doMiniBatchMutate(HRegion.java:3896)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3854)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3785)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doBatchOp(RSRpcServices.java:1027)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicBatchOp(RSRpcServices.java:959)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicRegionMutation(RSRpcServices.java:922)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.multi(RSRpcServices.java:2666)
>>                      at
>>         org.apache.hadoop.hbase.shaded.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:42014)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:413)
>>                      at
>>         org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:130)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:324)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:304)
>>                  Caused by: java.lang.VerifyError: class
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore$1
>>         overrides
>>         final method
>>         compare.(Lorg/apache/hadoop/hbase/Cell;Lorg/apache/hadoop/hbase/Cell;)I
>>                      at java.lang.ClassLoader.defineClass1(Native Method)
>>                      at
>>         java.lang.ClassLoader.defineClass(ClassLoader.java:763)
>>                      at
>>         java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
>>                      at
>>         java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
>>                      at
>>         java.net.URLClassLoader.access$100(URLClassLoader.java:73)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:368)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:362)
>>                      at
>>         java.security.AccessController.doPrivileged(Native Method)
>>                      at
>>         java.net.URLClassLoader.findClass(URLClassLoader.java:361)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>>                      at
>>         sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore.<init>(IndexMemStore.java:82)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.LocalTableState.<init>(LocalTableState.java:57)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.NonTxIndexBuilder.getIndexUpdate(NonTxIndexBuilder.java:52)
>>                      at
>>         org.apache.phoenix.hbase.index.builder.IndexBuildManager.getIndexUpdate(IndexBuildManager.java:90)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutateWithExceptions(Indexer.java:503)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:348)
>>                      ... 18 more
>>                  : 1 time, servers with issues:
>>         9ac923bd5c9f,16020,1537875547341
>>         -> RetriesExhaustedWithDetailsException: Failed 1 action:
>>         org.apache.phoenix.hbase.index.builder.IndexBuildingFailureException:
>>
>>         Failed to build index for unexpected reason!
>>                      at
>>         org.apache.phoenix.hbase.index.util.IndexManagementUtil.rethrowIndexingException(IndexManagementUtil.java:206)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:351)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1010)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$28.call(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost$ObserverOperationWithoutResult.callObserver(CoprocessorHost.java:540)
>>                      at
>>         org.apache.hadoop.hbase.coprocessor.CoprocessorHost.execOperation(CoprocessorHost.java:614)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.preBatchMutate(RegionCoprocessorHost.java:1007)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion$MutationBatchOperation.prepareMiniBatchOperations(HRegion.java:3487)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.doMiniBatchMutate(HRegion.java:3896)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3854)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:3785)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doBatchOp(RSRpcServices.java:1027)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicBatchOp(RSRpcServices.java:959)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicRegionMutation(RSRpcServices.java:922)
>>                      at
>>         org.apache.hadoop.hbase.regionserver.RSRpcServices.multi(RSRpcServices.java:2666)
>>                      at
>>         org.apache.hadoop.hbase.shaded.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:42014)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:413)
>>                      at
>>         org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:130)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:324)
>>                      at
>>         org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:304)
>>                  Caused by: java.lang.VerifyError: class
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore$1
>>         overrides
>>         final method
>>         compare.(Lorg/apache/hadoop/hbase/Cell;Lorg/apache/hadoop/hbase/Cell;)I
>>                      at java.lang.ClassLoader.defineClass1(Native Method)
>>                      at
>>         java.lang.ClassLoader.defineClass(ClassLoader.java:763)
>>                      at
>>         java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
>>                      at
>>         java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
>>                      at
>>         java.net.URLClassLoader.access$100(URLClassLoader.java:73)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:368)
>>                      at
>>         java.net.URLClassLoader$1.run(URLClassLoader.java:362)
>>                      at
>>         java.security.AccessController.doPrivileged(Native Method)
>>                      at
>>         java.net.URLClassLoader.findClass(URLClassLoader.java:361)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>>                      at
>>         sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
>>                      at
>>         java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.data.IndexMemStore.<init>(IndexMemStore.java:82)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.LocalTableState.<init>(LocalTableState.java:57)
>>                      at
>>         org.apache.phoenix.hbase.index.covered.NonTxIndexBuilder.getIndexUpdate(NonTxIndexBuilder.java:52)
>>                      at
>>         org.apache.phoenix.hbase.index.builder.IndexBuildManager.getIndexUpdate(IndexBuildManager.java:90)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutateWithExceptions(Indexer.java:503)
>>                      at
>>         org.apache.phoenix.hbase.index.Indexer.preBatchMutate(Indexer.java:348)
>>                      ... 18 more
>>                  : 1 time, servers with issues:
>>         9ac923bd5c9f,16020,1537875547341
>>
>>         I am not entirely sure if this is a bug, so have not opened a
>>         JIRA yet.
>>         Due to Guava issues with Tephra (see TEPHRA-181), I replaced
>>         HBase's
>>         Guava 11.0.2 with Guava 13.0.1. See
>>         https://github.com/Boostport/hbase-phoenix-all-in-one/blob/master/Dockerfile#L43
>>
>>         Is Guava 13.0.1 compatible with this release (signaling that
>>         this might
>>         be cause by incompatible versions of Guava) or should I be
>>         investigating
>>         something else?
>>
>>         Francis
>>
>


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