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From Ankit Singhal <ankitsingha...@gmail.com>
Subject Re: Phoenix CSV Bulk Load fails to load a large file
Date Thu, 07 Sep 2017 08:08:07 GMT
bq. This runs successfully if I split this into 2 files, but I'd like to
avoid doing that.
do you run a different job for each file?

if your HBase cluster is not co-located with your yarn cluster then it may
be possible that copying of large HFile is timing out(this may happen due
to the fewer regions in HBase table or hot-spotting). you can check your
output directory for file sizes and see if you are hitting this problem.
Consider increasing the time-out or splitting the hot region.




On Thu, Sep 7, 2017 at 5:25 AM, Ted Yu <yuzhihong@gmail.com> wrote:

> bq. hbase.bulkload.retries.retryOnIOException is disabled. Unable to
> recover
>
> The above is from HBASE-17165.
>
> See if the load can pass after enabling the config.
>
> On Wed, Sep 6, 2017 at 3:11 PM, Sriram Nookala <sriram@firstfuel.com>
> wrote:
>
>> It finally times out with these exceptions
>>
>> ed Sep 06 21:38:07 UTC 2017, RpcRetryingCaller{globalStartTime=1504731276347,
>> pause=100, retries=35}, java.io.IOException: Call to
>> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local exception:
>> org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=77,
>> waitTime=60001, operationTimeout=60000 expired.
>>
>>
>> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet
>> ries(RpcRetryingCaller.java:159)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.tryA
>> tomicRegionLoad(LoadIncrementalHFiles.java:956)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.
>> call(LoadIncrementalHFiles.java:594)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.
>> call(LoadIncrementalHFiles.java:590)
>>
>> at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>>
>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPool
>> Executor.java:1142)
>>
>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoo
>> lExecutor.java:617)
>>
>> at java.lang.Thread.run(Thread.java:745)
>>
>> Caused by: java.io.IOException: Call to ip-10-123-0-60.ec2.internal/10
>> .123.0.60:16020 failed on local exception: org.apache.hadoop.hbase.ipc.CallTimeoutException:
>> Call id=77, waitTime=60001, operationTimeout=60000 expired.
>>
>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.wrapException(
>> AbstractRpcClient.java:292)
>>
>> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl
>> .java:1274)
>>
>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.callBlockingMe
>> thod(AbstractRpcClient.java:227)
>>
>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient$BlockingRpcCha
>> nnelImplementation.callBlockingMethod(AbstractRpcClient.java:336)
>>
>> at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$
>> ClientService$BlockingStub.bulkLoadHFile(ClientProtos.java:35408)
>>
>> at org.apache.hadoop.hbase.protobuf.ProtobufUtil.bulkLoadHFile(
>> ProtobufUtil.java:1676)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3.
>> call(LoadIncrementalHFiles.java:656)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3.
>> call(LoadIncrementalHFiles.java:645)
>>
>> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet
>> ries(RpcRetryingCaller.java:137)
>>
>> ... 7 more
>>
>> Caused by: org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=77,
>> waitTime=60001, operationTimeout=60000 expired.
>>
>> at org.apache.hadoop.hbase.ipc.Call.checkAndSetTimeout(Call.java:73)
>>
>> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl
>> .java:1248)
>>
>> ... 14 more
>>
>> 17/09/06 21:38:07 ERROR mapreduce.LoadIncrementalHFiles:
>> hbase.bulkload.retries.retryOnIOException is disabled. Unable to recover
>>
>> 17/09/06 21:38:07 INFO zookeeper.ZooKeeper: Session: 0x15e58ca21fc004c
>> closed
>>
>> 17/09/06 21:38:07 INFO zookeeper.ClientCnxn: EventThread shut down
>>
>> Exception in thread "main" java.io.IOException: BulkLoad encountered an
>> unrecoverable problem
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk
>> LoadPhase(LoadIncrementalHFiles.java:614)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu
>> lkLoad(LoadIncrementalHFiles.java:463)
>>
>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu
>> lkLoad(LoadIncrementalHFiles.java:373)
>>
>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu
>> lkload(AbstractBulkLoadTool.java:355)
>>
>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob(
>> AbstractBulkLoadTool.java:332)
>>
>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A
>> bstractBulkLoadTool.java:270)
>>
>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra
>> ctBulkLoadTool.java:183)
>>
>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
>>
>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
>>
>> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa
>> dTool.java:101)
>>
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>
>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce
>> ssorImpl.java:62)
>>
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>> thodAccessorImpl.java:43)
>>
>> at java.lang.reflect.Method.invoke(Method.java:498)
>>
>> at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
>>
>> at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
>>
>> Caused by: org.apache.hadoop.hbase.client.RetriesExhaustedException:
>> Failed after attempts=35, exceptions:
>>
>> Wed Sep 06 20:55:36 UTC 2017, RpcRetryingCaller{globalStartTime=1504731276347,
>> pause=100, retries=35}, java.io.IOException: Call to
>> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local exception:
>> org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=9,
>> waitTime=60002, operationTimeout=60000 expired.
>>
>> On Wed, Sep 6, 2017 at 5:01 PM, Sriram Nookala <sriram@firstfuel.com>
>> wrote:
>>
>>> Phoenix 4.11.0, HBase 1.3.1
>>>
>>> This is what I get from jstack
>>>
>>> "main" #1 prio=5 os_prio=0 tid=0x00007fb3d0017000 nid=0x5de7 waiting on
>>> condition [0x00007fb3d75f7000]
>>>
>>>    java.lang.Thread.State: WAITING (parking)
>>>
>>> at sun.misc.Unsafe.park(Native Method)
>>>
>>> - parking to wait for  <0x00000000f2222588> (a
>>> java.util.concurrent.FutureTask)
>>>
>>> at java.util.concurrent.locks.LockSupport.park(LockSupport.java:175)
>>>
>>> at java.util.concurrent.FutureTask.awaitDone(FutureTask.java:429)
>>>
>>> at java.util.concurrent.FutureTask.get(FutureTask.java:191)
>>>
>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk
>>> LoadPhase(LoadIncrementalHFiles.java:604)
>>>
>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu
>>> lkLoad(LoadIncrementalHFiles.java:463)
>>>
>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu
>>> lkLoad(LoadIncrementalHFiles.java:373)
>>>
>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu
>>> lkload(AbstractBulkLoadTool.java:355)
>>>
>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob(
>>> AbstractBulkLoadTool.java:332)
>>>
>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A
>>> bstractBulkLoadTool.java:270)
>>>
>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra
>>> ctBulkLoadTool.java:183)
>>>
>>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
>>>
>>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
>>>
>>> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa
>>> dTool.java:101)
>>>
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>
>>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce
>>> ssorImpl.java:62)
>>>
>>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>>> thodAccessorImpl.java:43)
>>>
>>> at java.lang.reflect.Method.invoke(Method.java:498)
>>>
>>> at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
>>>
>>> at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
>>>
>>>
>>>
>>>
>>> On Wed, Sep 6, 2017 at 4:16 PM, Sergey Soldatov <
>>> sergeysoldatov@gmail.com> wrote:
>>>
>>>> Do you have more details on the version of Phoenix/HBase you are using
>>>> as well as how it hangs (Exceptions/messages that may help to understand
>>>> the problem)?
>>>>
>>>> Thanks,
>>>> Sergey
>>>>
>>>> On Wed, Sep 6, 2017 at 1:13 PM, Sriram Nookala <sriram@firstfuel.com>
>>>> wrote:
>>>>
>>>>> I'm trying to load a 3.5G file with 60 million rows using
>>>>> CsvBulkLoadTool. It hangs while loading HFiles. This runs successfully
if I
>>>>> split this into 2 files, but I'd like to avoid doing that. This is on
>>>>> Amazon EMR, is this an issue due to disk space or memory. I have a single
>>>>> master and 2 region server configuration with 16 GB memory on each node.
>>>>>
>>>>
>>>>
>>>
>>
>

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